The distinction appears to be that while acute training beefs up relevant brain regions, long-term training can slim then down, by making grey matter more efficient (so that you need less of it); also, long-term practice of repetitive motor actions (like learning to ride a bicycle!) makes things less conscious and more automatic — you use your cortex less, because you're using other resources (basal ganglia; cerebellum; spinal cord) more.
The suggestion that training can beef up short-term and slim down long-term was apparently first made in 1998.
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